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Dr Erin Scott

a picture of Erin Scott

Publications

2016
E. Scott, A. Hoyle and C. Shankland. Process Algebra with Layers: A Language for Multi-Scale Integration Modelling, Illustrated by a Cell Cycle and DNA Damage Case Study. Extended abstract in the proceedings of the 13th International Conference on Computational Intelligence methods for Bioinformatics and Biostatistics (CIBB 2016), Stirling.

E. Scott, N. Serpetti, J.Steenbeek and JJ.Heymans. A Stepwise Fitting Procedure for automated fitting of Ecopath with Ecosim models. SoftwareX. DOI:10.1016/j.softx.2016.02.002 Available online

2013
E. Scott, A. Hoyle and C. Shankland. PEPA'd Oysters: Converting Dynamic Energy Budget Models to Bio-PEPA, illustrated by a Pacific oyster case study. In the proceedings of the Sixth International Workshop on the Practical Application of Stochastic Modelling (PASM) and the Eleventh International Workshop on Parallel and Distributed Methods in Verification (PDMC), J. Bradley, K. Heljanko, W. Knottenbelt and N. Thomas (Eds.), ENTCS 296, pp. 211-228, 2013. DOI: 10.1016/j.entcs.2013.07.014 Available online

2012
D. Marco, E. Scott, D. Cairns, A. Graham, J. Allen, S. Mahajan and C. Shankland. Investigating co-infection dynamics through evolution of Bio-PEPA model parameters: a combined process algebra and evolutionary computing approach. In the proceedings of 10th Conference on Computational Methods in Systems Biology, CMSB 2012, D. Gilbert and M. Heiner (Eds.), LNCS 7605, pp. 227-246, Springer-Verlag 2012. ISBN 978-1-4244-7834-7. DOI: 10.1007/978-3-642-33636-2_14 Available online

S. Benkirane, R. Norman, E. Scott and C. Shankland. Measles Epidemics and PEPA: an exploration of historic disease dynamics using process algebra. In proceedings of 18th International Symposium on Formal Methods, FM 2012, D. Giannakopoulou and D. Mery (Eds.), LNCS 7436, pp. 101-115, 2012. DOI: 10.1007/978-3-642-32759-9_11 Available online

2010
Erin Scott, Simmi M. Mahajan, Timothy Brand-Spencer, Judith E. Allen, Rachel Norman, Andrea L. Graham, Carron Shankland. Modelling Immunological Systems using PEPA: a preliminary report. In: 9th Workshop on Process Algebra and Stochastically Timed Activities: pp 64-69, London, 2010. Available online

PhD Thesis

2016
Process Algebra with Layers: A Language for Multi-scale Integration Modelling. Available online

Honours Project

2011
PEPA or Bio-PEPA: A Comparison. Available online


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